List of all items
Structs
- bet::BetParams
- bet::evolution::BetParameters
- bet::evolution::BetParams
- bgremove::ismv::IsmvParams
- bgremove::lbv::LbvParams
- bgremove::pdf::PdfParams
- bgremove::sdf::SdfParams
- bgremove::sharp::SharpParams
- bgremove::vsharp::VsharpParams
- fft::Fft3dWorkspace
- fft::Fft3dWorkspaceF32
- fft::SendPtr
- inversion::ilsqr::IlsqrParams
- inversion::medi::MediOpBuffers
- inversion::medi::MediParams
- inversion::medi::MediWorkspace
- inversion::nltv::NltvParams
- inversion::rts::RtsParams
- inversion::tgv::BoundingBox
- inversion::tgv::TgvParams
- inversion::tgv::TgvWorkspace
- inversion::tikhonov::TikhonovParams
- inversion::tkd::TkdParams
- inversion::tv::TvParams
- nifti_io::NiftiData
- priority_queue::BucketQueue
- separation::chi_sep_medi::ChiSepWorkspace
- swi::SwiParams
- unwrap::romeo::RomeoParams
- utils::bias_correction::HomogeneityParams
- utils::curvature::CurvatureResult
- utils::curvature::Point3D
- utils::curvature::Triangle
- utils::frangi::FrangiParams
- utils::frangi::FrangiResult
- utils::multi_echo::LinearFitParams
- utils::multi_echo::LinearFitResult
- utils::multi_echo::Mcpc3dsParams
- utils::qsmart::QsmartParams
- utils::qsmart::QsmartResult
- utils::vasculature::SphereKernel
- utils::vasculature::VasculatureParams
Enums
Traits
- par::FromParallelIterator
- par::IndexedParallelIterator
- par::IntoParallelIterator
- par::IntoParallelRefIterator
- par::IntoParallelRefMutIterator
- par::ParallelBridge
- par::ParallelDrainFull
- par::ParallelDrainRange
- par::ParallelExtend
- par::ParallelIterator
- par::ParallelSlice
- par::ParallelSliceMut
- par::ParallelString
Macros
Functions
- bet::evolution::estimate_brain_parameters
- bet::evolution::evolution_pass
- bet::evolution::fill_holes
- bet::evolution::percentile
- bet::evolution::run_bet
- bet::evolution::run_bet_with_progress
- bet::evolution::sample_intensities_fsl
- bet::evolution::sample_intensity
- bet::evolution::surface_to_mask
- bet::icosphere::create_icosphere
- bet::icosphere::subdivide_icosphere
- bet::mesh::build_neighbor_matrix
- bet::mesh::compute_mean_edge_length
- bet::mesh::compute_mean_edge_length_mm
- bet::mesh::compute_vertex_normals
- bet::mesh::self_intersection_heuristic
- bet::mesh::vertex_distance
- bet::run_bet
- bet::run_bet_with_progress
- bgremove::ismv::erode_mask
- bgremove::ismv::ismv
- bgremove::ismv::ismv_default
- bgremove::ismv::ismv_with_progress
- bgremove::ismv::vec_norm
- bgremove::lbv::lbv
- bgremove::lbv::lbv_default
- bgremove::lbv::lbv_with_progress
- bgremove::pdf::apply_a
- bgremove::pdf::apply_at
- bgremove::pdf::pdf
- bgremove::pdf::pdf_default
- bgremove::pdf::pdf_with_progress
- bgremove::pdf::vec_norm
- bgremove::sdf::convolve_1d_direction
- bgremove::sdf::convolve_1d_direction_sigma
- bgremove::sdf::gaussian_smooth_3d_masked_f64
- bgremove::sdf::gaussian_smooth_3d_with_filter_size
- bgremove::sdf::sdf
- bgremove::sdf::sdf_curvature
- bgremove::sdf::sdf_default_stage1
- bgremove::sdf::sdf_default_stage2
- bgremove::sdf::sdf_simple
- bgremove::sdf::sdf_with_progress
- bgremove::sharp::sharp
- bgremove::sharp::sharp_default
- bgremove::smv::smv
- bgremove::smv::smv_default
- bgremove::vsharp::vsharp
- bgremove::vsharp::vsharp_default
- bgremove::vsharp::vsharp_with_progress
- fft::fft3d
- fft::fft3d_real
- fft::fftfreq
- fft::fftfreq_f32
- fft::fftshift
- fft::fftshift_inplace
- fft::idx3d
- fft::ifft3d
- fft::ifft3d_real
- fft::ifftshift
- fft::wrap_angle
- inversion::ilsqr::axpy
- inversion::ilsqr::axpy_complex
- inversion::ilsqr::compute_laplacian
- inversion::ilsqr::dipole_kspace_weights_ilsqr
- inversion::ilsqr::fastqsm_step
- inversion::ilsqr::fgrad_masked
- inversion::ilsqr::gradient_weights_component
- inversion::ilsqr::gradient_weights_ilsqr
- inversion::ilsqr::ilsqr
- inversion::ilsqr::ilsqr_simple
- inversion::ilsqr::ilsqr_with_progress
- inversion::ilsqr::lap1_axis
- inversion::ilsqr::lap1_backward
- inversion::ilsqr::lap1_forward
- inversion::ilsqr::laplacian_weights_ilsqr
- inversion::ilsqr::lsmr
- inversion::ilsqr::lsqr
- inversion::ilsqr::lsqr_complex
- inversion::ilsqr::lsqr_step
- inversion::ilsqr::multiply_elementwise
- inversion::ilsqr::norm
- inversion::ilsqr::norm_complex
- inversion::ilsqr::prctile
- inversion::ilsqr::scale_complex_inplace
- inversion::ilsqr::scale_inplace
- inversion::ilsqr::sign_array
- inversion::ilsqr::susceptibility_artifacts_step
- inversion::medi::apply_dipole_conv
- inversion::medi::apply_medi_operator_core
- inversion::medi::apply_smv_kernel_ws
- inversion::medi::bdiv_periodic_inplace_f32
- inversion::medi::cg_solve_medi
- inversion::medi::compute_rhs_inplace
- inversion::medi::dataterm_mask_f32
- inversion::medi::fgrad_linext_f32
- inversion::medi::fgrad_linext_inplace_f32
- inversion::medi::fgrad_periodic_inplace_f32
- inversion::medi::gradient_mask_f32
- inversion::medi::medi_l1
- inversion::medi::medi_l1_default
- inversion::medi::medi_l1_with_progress
- inversion::nltv::nltv
- inversion::nltv::nltv_default
- inversion::nltv::nltv_with_progress
- inversion::nltv::weighted_shrink
- inversion::rts::rts
- inversion::rts::rts_default
- inversion::rts::rts_with_progress
- inversion::rts::shrink
- inversion::tgv::apply_laplacian_inplace
- inversion::tgv::apply_stencil
- inversion::tgv::compute_dipole_stencil
- inversion::tgv::compute_laplacian
- inversion::tgv::compute_oblique_stencil
- inversion::tgv::compute_operator_norm_sqr
- inversion::tgv::compute_phase_laplacian
- inversion::tgv::compute_relative_change
- inversion::tgv::dst1
- inversion::tgv::dst3d
- inversion::tgv::dst_sin_table
- inversion::tgv::erode_mask
- inversion::tgv::extract_subvolume
- inversion::tgv::frobenius_norm
- inversion::tgv::get_default_alpha
- inversion::tgv::get_default_iterations
- inversion::tgv::grad_norm_sq
- inversion::tgv::insert_subvolume
- inversion::tgv::norm3
- inversion::tgv::project_linf3
- inversion::tgv::project_linf6
- inversion::tgv::solve_symmetric_pseudoinverse
- inversion::tgv::tgv_qsm
- inversion::tgv::tgv_qsm_with_progress
- inversion::tikhonov::tikhonov
- inversion::tikhonov::tikhonov_default
- inversion::tkd::tkd
- inversion::tkd::tkd_default
- inversion::tkd::tsvd
- inversion::tv::shrink
- inversion::tv::tv_admm
- inversion::tv::tv_admm_default
- inversion::tv::tv_admm_with_progress
- kernels::dipole::dipole_kernel
- kernels::dipole::dipole_kernel_default
- kernels::dipole::dipole_kernel_default_f32
- kernels::dipole::dipole_kernel_f32
- kernels::laplacian::laplacian_kernel
- kernels::laplacian::negative_laplacian_kernel
- kernels::smv::smv_kernel
- kernels::smv::smv_kernel_f32
- nifti_io::get_affine
- nifti_io::get_header_info
- nifti_io::is_gzip
- nifti_io::load_nifti
- nifti_io::load_nifti_4d
- nifti_io::read_nifti_dims
- nifti_io::read_nifti_file
- nifti_io::save_nifti
- nifti_io::save_nifti_gz
- nifti_io::save_nifti_to_file
- region_grow::grow_region_unwrap
- region_grow::idx3d
- region_grow::idx4d
- separation::chi_sep_medi::apply_chisep_operator
- separation::chi_sep_medi::cg_solve_chisep
- separation::chi_sep_medi::chi_sep_medi
- separation::chi_sep_medi::chi_sep_medi_with_progress
- solvers::cg::cg_solve
- solvers::lsmr::lsmr_solve
- solvers::lsmr::norm
- swi::calculate_swi
- swi::calculate_swi_default
- swi::create_mip
- swi::create_mip_default
- swi::create_phase_mask
- swi::highpass_filter
- swi::negative_range
- swi::positive_range
- swi::rescale
- swi::softplus_scaling
- unwrap::laplacian::laplacian_unwrap
- unwrap::laplacian::solve_poisson_fft
- unwrap::laplacian::wrap
- unwrap::laplacian::wrapped_laplacian_periodic
- unwrap::romeo::calculate_weights_romeo
- unwrap::romeo::calculate_weights_romeo_configurable
- unwrap::romeo::calculate_weights_single_echo
- unwrap::romeo::idx3d
- unwrap::romeo::voxel_quality_romeo
- unwrap::romeo::wrap_angle
- utils::bias_correction::box_filter_line
- utils::bias_correction::box_filter_line_weighted
- utils::bias_correction::box_segment
- utils::bias_correction::check_box_sizes
- utils::bias_correction::fill_and_smooth
- utils::bias_correction::fill_holes
- utils::bias_correction::flood_fill_component
- utils::bias_correction::gaussian_smooth_3d
- utils::bias_correction::gaussian_smooth_3d_boxsizes
- utils::bias_correction::get_box_sizes
- utils::bias_correction::get_sensitivity
- utils::bias_correction::idx3d
- utils::bias_correction::makehomogeneous
- utils::bias_correction::nan_box_filter_line
- utils::bias_correction::robust_mask
- utils::bias_correction::rss_combine
- utils::curvature::calculate_curvature_proximity
- utils::curvature::calculate_gaussian_curvature
- utils::curvature::compute_curvatures_from_mesh
- utils::curvature::convolve_1d_direction_masked
- utils::curvature::create_surface_mask
- utils::curvature::dilate_mask
- utils::curvature::erode_mask
- utils::curvature::extract_surface_voxels
- utils::curvature::gaussian_smooth_3d_masked
- utils::curvature::morphological_close
- utils::curvature::triangulate_surface
- utils::frangi::compute_vesselness
- utils::frangi::convolve_1d_direction
- utils::frangi::eigenvalues_3x3_cardano
- utils::frangi::eigenvalues_3x3_symmetric
- utils::frangi::frangi_filter_3d
- utils::frangi::frangi_filter_3d_default
- utils::frangi::frangi_filter_3d_with_progress
- utils::frangi::gaussian_smooth_3d
- utils::frangi::hypot
- utils::frangi::sort_by_abs
- utils::frangi::tql2
- utils::frangi::tred2
- utils::gradient::bdiv
- utils::gradient::bdiv_inplace
- utils::gradient::bdiv_inplace_f32
- utils::gradient::bdiv_masked_inplace_f32
- utils::gradient::fgrad
- utils::gradient::fgrad_f32
- utils::gradient::fgrad_inplace
- utils::gradient::fgrad_inplace_f32
- utils::gradient::fgrad_masked_inplace_f32
- utils::gradient::grad_magnitude_squared
- utils::gradient::symdiv_inplace_f32
- utils::gradient::symgrad_inplace_f32
- utils::mask::create_sphere_mask
- utils::multi_echo::calculate_b0_weighted
- utils::multi_echo::compute_reliability_mask
- utils::multi_echo::field_to_hz
- utils::multi_echo::find_seed_point
- utils::multi_echo::gaussian_smooth_3d_phase
- utils::multi_echo::gaussian_smooth_3d_separable
- utils::multi_echo::hermitian_inner_product
- utils::multi_echo::idx3d
- utils::multi_echo::make_gaussian_kernel
- utils::multi_echo::mcpc3ds_b0_pipeline
- utils::multi_echo::mcpc3ds_single_coil
- utils::multi_echo::multi_echo_linear_fit
- utils::multi_echo::unwrap_with_romeo
- utils::multi_echo::wrap_to_pi
- utils::padding::next_fast_fft_size
- utils::padding::pad_to_fast_fft
- utils::padding::unpad
- utils::qsmart::adjust_offset
- utils::qsmart::compute_removed_voxels
- utils::qsmart::compute_weighted_mask_stage1
- utils::qsmart::compute_weighted_mask_stage2
- utils::r2star::log_linear_fit
- utils::r2star::r2star_arlo
- utils::r2star::t2star_from_r2star
- utils::r2star::use_arlo
- utils::simd_ops::apply_gradient_weights_f32
- utils::simd_ops::apply_gradient_weights_f64
- utils::simd_ops::axpy_f32
- utils::simd_ops::axpy_f64
- utils::simd_ops::combine_terms_f32
- utils::simd_ops::compute_p_weights_f32
- utils::simd_ops::dot_product_f32
- utils::simd_ops::dot_product_f64
- utils::simd_ops::negate_f32
- utils::simd_ops::negate_f64
- utils::simd_ops::norm_squared_f32
- utils::simd_ops::norm_squared_f64
- utils::simd_ops::scale_f32
- utils::simd_ops::scale_f64
- utils::simd_ops::subtract_f32
- utils::simd_ops::subtract_f64
- utils::simd_ops::xpby_f32
- utils::threshold::otsu_threshold
- utils::vasculature::dilate_grayscale_optimized
- utils::vasculature::erode_grayscale_optimized
- utils::vasculature::generate_vasculature_mask
- utils::vasculature::generate_vasculature_mask_default
- utils::vasculature::generate_vasculature_mask_with_progress
- utils::vasculature::morphological_bottom_hat